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ChatSpatial

Research and life science teams who analyse spatial gene expression data and want to run standard analyses and plots from a chat.

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  • MITlicence
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git clone https://github.com/cafferychen777/ChatSpatial.git
README.md

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What it does

An MCP server for spatial transcriptomics analysis in natural language. It covers cell annotation, deconvolution, spatial statistics and visualization. Each analysis runs through defined tools rather than code generated on the fly.

Use cases

  1. 01Annotate cell types in a spatial dataset
  2. 02Estimate cell type mixtures with deconvolution
  3. 03Produce spatial statistics and plots for a report

Questions about
ChatSpatial.

What is ChatSpatial used for?

Research and life science teams who analyse spatial gene expression data and want to run standard analyses and plots from a chat. An MCP server for spatial transcriptomics analysis in natural language. It covers cell annotation, deconvolution, spatial statistics and visualization. Each analysis runs through defined tools rather than code generated on the fly.

How do I install ChatSpatial?

Run this in your terminal: git clone https://github.com/cafferychen777/ChatSpatial.git

Is ChatSpatial open source?

Yes. The code is on GitHub (cafferychen777/ChatSpatial) under the MIT licence.

Is ChatSpatial safe to use?

It passed our automatic scan for credential theft, hidden instructions and risky install commands. Third party open source software. Sabemos AI does not maintain it. Check the code and permissions before you connect it to company data.